Scaffold Ga0070716_100000011

Overview

Basic Information

• Taxon OID: 3300006173
• Scaffold ID: Ga0070716_100000011
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 143884
• Total Scaffold Genes: 142
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 100 (70.42%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017899	Metagenome	238	Y
F066087	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070716_100000011119	F017899	N/A	VAKPSVWRRQATRGATQLANEKRPNSQTAIVWLSDGIAPIFNEDREATEQILIRQNAIFNSLTVKMRTLYKFLLPIGQPLIGWSGISLAGSARRLAQQSGGEAVHVSRVKDYGSGLSQIIGSLTARYSLGFAISEQEKDDGRMHQLDVRVKALDAKGKTRRLLVNSRKGYYMPNAENSVTASTKP*
Ga0070716_100000011132	F066087	AGGA	MQSIDDLANVITDLDPSEQQVLLDRVAQLNFQKGLHDLAEKVRARLAHEGALGAQPEQVWAELHRIREQIAEHDYPT*