Scaffold Ga0082041_105845

Overview

Basic Information

• Taxon OID: 3300006171
• Scaffold ID: Ga0082041_105845
• Source Dataset Name: Saline water microbial communities from Bras del Port Salterns, Alicante, Spain ? SS19
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: GATC-Biotech AG, Konstanz, Germany
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 1123
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Salt Crystallizer Ponds → Unclassified → Salt Cristalyzer Pond → Saline Water Microbial Communities From Bras Del Port Salterns, Alicante, Spain

Source Dataset Sampling Location

• Location Name: Alicante, Spain
• Coordinates
  • Lat. (^o): 38.3852246
  • Long. (^o): -0.5132249

Associated Families

Family	Category	Number of Sequences	3D Structure?
F097996	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0082041_1058452	F097996	AGGAG	MATIKDGMHPRYLGWQVDWPVFVKMPFSANGREWKRQEHFNWAERGIDQKQVATLYATGHIYHNYELEKQNKVGDRLGELNSEQLKRLVVQLNDIVKRGTTTTKEFQDKRCKQSKLEDKQRGLIRRFLNRNQWIVEDFYEIRDYLLAED*