Scaffold Ga0082029_1693110

Overview

Basic Information

• Taxon OID: 3300006169
• Scaffold ID: Ga0082029_1693110
• Source Dataset Name: Termite nest microbial communities from Madurai, India
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: BGI Tech Solutions Co., Ltd.
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 115202
• Total Scaffold Genes: 109
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (58.72%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest → Termite Nest Microbial Communities From Madurai, India

Source Dataset Sampling Location

• Location Name: MKU,India
• Coordinates
  • Lat. (^o): 9.941418
  • Long. (^o): 78.008896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006775	Metagenome	365	Y
F066113	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0082029_169311017	F006775	GGAG	MQLGKDSCACGHVLDHHDGGRGGPCTYCACAAGEPPTAFQVGMIHALHEVTLTLVRLVKEIQTQRGVPPAQ*
Ga0082029_169311095	F066113	N/A	MSPDFPLRVITDDGEVEVIASPEELIRSVESLDSTDPRNRVWVRDAYDRTVRVRVRGGFVEMLEPA*
Ga0082029_169311098	F066113	AGG	MTPEFPLRILTDDGECEVVATPDDLIRTVESLDSTDPRNRVWVRDAYDRTVQVRVRGGLVEVLELVG*