Scaffold Ga0066836_10199775

Overview

Basic Information

• Taxon OID: 3300006166
• Scaffold ID: Ga0066836_10199775
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1186
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030873	Metagenome	184	N
F068116	Metagenome	125	N
F089401	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066836_101997752	F068116	AGG	MRTQISDYELITFFNNLKEIIQAQKELNHVLAKRITNLENRLEKKESEIIDVV*
Ga0066836_101997753	F030873	GAG	MLFKRNDKIAIVVKPKTHNGEVNEKDYFTRYGEMRKDSKFLVSKNIITFWDTQKDSFRSFNLSDVVSITNLSRTPLEINKKEQEKKEREKMKGYNCLSCKSKLTMDFRNKFDSNYCGDC*
Ga0066836_101997755	F089401	N/A	MVEKNICQNPKCCNDDTKDRWNKKIGRYQSRKAYHKPRIKSEYYHWVILEYFCTTSCANSWLNDNLENIIERKHCPNKIVEKIIRQ*