Scaffold Ga0075443_10076374

Overview

Basic Information

• Taxon OID: 3300006165
• Scaffold ID: Ga0075443_10076374
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1139
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010947	Metagenome	297	Y
F012625	Metagenome	279	Y
F040339	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075443_100763741	F010947	N/A	KDIKKILNPALVEKWNKNKDGNLNGIVFNKGDLVSRKGCAGRSLGIVLEQDGVMATVQWTEQPEELIEFKRIVFVSGLNLVSGVNK*
Ga0075443_100763742	F040339	AGGAG	MSIDNIDKKTYGELMYRLGQMDAILEDMNSTIARFHEESRSIREAHSPEHVNALNEALQRTAQTPTDAQRQEAEEE*
Ga0075443_100763744	F012625	GAG	MDPIHIKEISVGDLVKEHTKSSKKRVGLVHEVISNYYLNIKWLDGSVDYPHYRHRNKYEVTKFIDGDAYPNYLQDYIQGKRW*