Scaffold Ga0075443_10071132

Overview

Basic Information

• Taxon OID: 3300006165
• Scaffold ID: Ga0075443_10071132
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1179
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F021188	Metagenome	220	N
F092702	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075443_100711322	F021188	GGAG	MEDTEELEIIWIPEEEAKYNLTIENDKGVSELVDLPASTIDRICKKKFGHTNWARMGAIFPEELTRNPHELDYLEGIVYFKHPRLV*
Ga0075443_100711323	F000720	GAGG	MILNKEDKIVRAEIPDRMMSTTFTLPIDDRKVVGIVNYTADTNGVTPLAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKDLADTLSQDNIIGQMVNYFHKNVEAIILGTPIDKKQRMLSTDPYASTMKE*
Ga0075443_100711324	F092702	N/A	WYFCLALLVVNFRYIGKLNHTIDTMWHEIEQVKDTNILLYQFIEEHENDFE*