Scaffold Ga0075443_10070148

Overview

Basic Information

• Taxon OID: 3300006165
• Scaffold ID: Ga0075443_10070148
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1187
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002928	Metagenome	520	Y
F026711	Metagenome	197	Y
F033955	Metagenome	176	N
F079205	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075443_100701482	F033955	AGGGGG	MKIVRIDLQGACEPMEFKSKKSLREYLIDFHLQDYHKEDEYGVEDIKLIKSFSLDQICDYFGWGYEQANTQKG*
Ga0075443_100701483	F026711	N/A	VIILVGAMNKQTHRKDSMTKITQYDAQMVADWYNGSNLIHTSIATNKKIKKLFEQSEKLRLKAHKIVVNDNYWKFKFKGKSYRQLKVIYNNNK*
Ga0075443_100701484	F002928	AGGGGG	MAKNVLVIFNMQIGEYEHSDQYIFNKIKSEWGYCKEFWGISKKDELKENVFWDDQMLNAISVHSEQEITNEQAKTLQQLGLA*
Ga0075443_100701485	F079205	AGGA	MTQRYEVQTKFTYGWENVWMDDDKPVVFRTKKDAQAELKDNVDSWNNDPNTTSKYSYDDYRVEEVK*