Scaffold Ga0075443_10009861

Overview

Basic Information

• Taxon OID: 3300006165
• Scaffold ID: Ga0075443_10009861
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3316
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032817	Metagenome / Metatranscriptome	179	Y
F063074	Metagenome / Metatranscriptome	130	Y
F101869	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075443_100098611	F101869	N/A	FLGTAAMQHYQIAIAGLYTTTAQGVVEGSIPAYYGMEVAHFASMPANEFMIAAPQNLVMLTDEYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA*
Ga0075443_100098612	F063074	N/A	MACNVTLANITYGCDDLGIGGIVELHVSSREDALAAITTKDTATRVISAVTPIAALDIAQFSFNLKDGFSVFSEVKTSNADGTFSTVPTISAEFPKMDAARITALDQMSNGAPEMVAFVKTAAGTHHVCGLDFGIYTSTVDGNSGTGRSEKNRFQVTLTGEEAGLSYSITSALFNTVVGN
Ga0075443_100098615	F032817	N/A	MAFNCSILLSDIDINCSKRVTGGIEKVILLLQKDLTITFDPTDVTLVTNVGTANTVSFEHNIKDGVSSFDENKNISNGLGVVTTNIIVQVPAVDNKINQIDYMSRREDIVAIIVHNNDTVSISGWMDGLTMNYEANSGTSVSDKSYINITLNTVSGIASLVLDDKTPFTDQTIFD*