Scaffold Ga0075443_10007453

Overview

Basic Information

• Taxon OID: 3300006165
• Scaffold ID: Ga0075443_10007453
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3877
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053550	Metagenome / Metatranscriptome	141	Y
F070556	Metagenome / Metatranscriptome	123	Y
F092748	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075443_100074532	F053550	N/A	LRNKDQDHINMREEIKRARLKTKVLKQYPNARPMLTAEGVRIMSGDVYIAEEFYFPATTCEEKAWDYASVACKTTQQFNRTHPMRMDLVDIESKINRINKRRGPRVKQR*
Ga0075443_100074534	F092748	N/A	MNKVTKVPSSMNMTAAINTEKVAHLGKNYASIDFEIKEQVNASDFKYAKMKPIIGTIIIGNRRVEVTYSELNNIMRTAADAMNLCDQSYRMGRWGKATR*
Ga0075443_100074535	F070556	N/A	MGFHKRRIDDDQVIDMYRRHGCQGVIDWFTKGVDAVTTSGDLSEHVHDLLNIGLLTNVDKWNKISELISDASIKKGFNN*