Scaffold Ga0075441_10134903

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10134903
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 936
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036930	Metagenome	169	Y
F046014	Metagenome	152	N
F086173	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_101349031	F036930	AGGAG	MTEYTHLVEETRRQEAFREWKNKPLYLHASNGKMETKYQDGRIEIEDASTGKKTYDFPEGYEGEAYRENLFHRFLGFFTV*
Ga0075441_101349032	F046014	GAGG	MIRKRVYLNKPQAEGLIQIFRRNQLLDLLVYVAIYNKNKSPHYKLCIDCPLDTHPRLSNKLQDVLHTLVDKHSKALKQLAWEEYDDAETPVETLGLTPDFKEYIEEKEKEE*
Ga0075441_101349033	F086173	N/A	MLYKDKLPCAPLLHFDSKDAGTIKWTWRTKPAEAIYWKTYKPKRRDIKILSRVTPEQRQKVTKELHQDIIQNEHPPKTKQAKVRTL*