Scaffold Ga0075441_10095524

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10095524
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1142
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033221	Metagenome / Metatranscriptome	178	Y
F042572	Metagenome / Metatranscriptome	158	Y
F076505	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_100955243	F042572	AGGAGG	MSRNLIVYKVEYRLKSDPWERGKFVKTKRIVMTPDEVNQTGGYWRNHRNVERKFFKQMDNIIGDSYNSRYSIWSIKKA*
Ga0075441_100955245	F033221	GAG	MIPYNVLQQIEECKDKHSNYELIQYDLFFPEQSILDERDKEAKKIQRSFVTSIKQSLLKIITN*
Ga0075441_100955246	F076505	N/A	PRNNMTFHIWMGLIAILSSFVMSLLGVILMIHLDFWLGVLLTITGMVCLLRALPRISEDI