Scaffold Ga0075441_10094928

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10094928
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1146
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042573	Metagenome	158	Y
F077795	Metagenome	117	N
F105912	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_100949282	F042573	GAG	MTYETIFDEHDDSIELKKLRKENNQLKKTIDILQTDNDIKDYEIRILKERLKEKK*
Ga0075441_100949283	F077795	AGG	METINIEDQCLLYFFYNKIEKVYIGETSKGYGRFYQHKDKKFDKHNVKYISGKKLNFINNEYFRKYYELRLINRFKPKYNKEKTTAPTLNDFICKMFLWYENPNPTFINPLTAYNQIKYNKYFEYRTKQRRIKKVLNQYTNVWKNLDMSKKLYIDGQNAFSFLINETMKPSNNYSIKFTPRKERLHN*
Ga0075441_100949284	F105912	AGG	MRNAKYFDKDLYSKWHRRWDFIAMCDVDSVEICRNKGCWKPLAIIEHLFDTGSDKKKYTNIVEQIGQALKVPVFLVYYKKTTRDSLTFRVAQK