Scaffold Ga0075441_10090477

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10090477
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1179
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010878	Metagenome / Metatranscriptome	298	Y
F031261	Metagenome	183	Y
F051470	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_100904772	F051470	AGGAGG	MSNENTWIHDYFDERYEHYVEVLSKDIKDVGQVEAMADRMAMEDIYNLDMEG*
Ga0075441_100904775	F031261	AGGAGG	MNRTTRYAMTVDKESTEILVQLKQLQEVRQSVSLLNKHSKRKHYVKCQGRWGKDNPNYNGRQIPFCPLADAVKWDVYIYEK*
Ga0075441_100904776	F010878	GAG	MKIKAWNIGIVWEDGTEENIGDVPDWVATRVDEFLNELEEDSDDS*