Scaffold Ga0075441_10067181

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10067181
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1400
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005105	Metagenome / Metatranscriptome	412	Y
F012166	Metagenome	283	Y
F015027	Metagenome / Metatranscriptome	258	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_100671814	F015027	N/A	MTDKLYEATKKEVMSEHEEYKNADVPREVWIQRNEYLHKHIDKLNEEIKQLRVDNKRLTQQLEHQLNQFRNNGSI*
Ga0075441_100671816	F005105	N/A	MARKICDKCMGNGYRRIWKDQYEKEKITIQCAKCKSEGEIDEEPSYDSNSFGTDELQ*
Ga0075441_100671817	F012166	GAG	MADLANSGVFLQRELTPEEKLWKAVLSQGVYEACSKKYNALPLTYGEMRSALEWIDIYNKDFCDVCSFAGYDPRYILRKAKNKVNTWLPNGS*