Scaffold Ga0075441_10059956

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10059956
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1495
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001702	Metagenome	649	Y
F004464	Metagenome / Metatranscriptome	437	Y
F036934	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_100599562	F036934	N/A	MYNILLYTGFGFLALGFIGFIVSITMEREQDKKMFRQEQLNKSFNRHKNN*
Ga0075441_100599564	F004464	AGGA	MSMITFKTDDDRKNFQVKMALTMLRTEVKTGLMMCDPRKGSTVKTLARFFQGLKKTRKGAYKQLVDNGTYAFLDSNQRFPTETIEGGQ*
Ga0075441_100599565	F001702	AGGA	MNNEQKKMCKVIDKAFSQLHILSNITWTPYRDEIFDLNKKDEKQHRFNRPSSDFETSVNICAKMFTVKHIAENLLQIEKWKIKDLLTIRKSCLYAQSVVENYRDKIVKAWVDQDLKYLADLDYIALIDWKHHTEILERRSA*