Scaffold Ga0075441_10044898

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10044898
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1767
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED104 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015795	Metagenome	252	Y
F050680	Metagenome	145	Y
F075345	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_100448982	F075345	AGGAG	MSKKEITVNDIIDEVINYTNPPKEDLEKQIQQDKINYHLWQCGVAIKELQSAVDELAVKDQEAS*
Ga0075441_100448983	F015795	AGGAG	MSRTNDLYCMMRLSYEQAVDDYNCKKVDSVLSAYKKYHVINVGMSSGDPQGDILNFYDDDNRQESML*
Ga0075441_100448984	F050680	AGG	MFFTIVLRCDMPKIVEIKDKMAEPSLQEVISRLDSMFENMVYRGEDKVNIVLASLSFCISQLSIEFSDKEVAKLVDELLAQYIDKSAKK*