Scaffold Ga0075441_10040748

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10040748
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1866
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018267	Metagenome	236	Y
F087780	Metagenome	110	Y
F101902	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_1004074810	F101902	N/A	VKRRDDHIHRGIVMMVGPQETAIDHGKTVVKVQWFDGDLTFEFIKLLEVVSEAG*
Ga0075441_100407485	F018267	GAGG	VKVGDLISFKPKSFGDDDWSNPGIVLESYEHDDRELGGWKDLIWVVWINGYRCMVNERNDDVTYLTSS*
Ga0075441_100407489	F087780	GGAGG	VKLGDLVKVSFGPYDTDVTGIFIRDDTYATELDKDGWTVITRAYVLFEGEICSTPLDQLEILNASR*