Scaffold Ga0075441_10039776

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10039776
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1890
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018268	Metagenome / Metatranscriptome	236	Y
F026125	Metagenome / Metatranscriptome	199	N
F051473	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_100397762	F051473	N/A	LDKFNNKFISIDDDRFYVLGKVLVERCRYTPEDLKIMYGLADTILRNNEYYYICMNLIVAEFQEL*
Ga0075441_100397764	F018268	N/A	MKVKVEFDYPTIDGMIYEGTIMVCEQSDFNSRIQNEKIKGKMETGRIVWIPKKMLKKM*
Ga0075441_100397766	F026125	AGGAG	MFNFIDSWKSRKKPQWNIEVRLGRVTVLQLNYKQNKIRFMLLNWGFEYGA*