Scaffold Ga0075441_10039266

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10039266
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1904
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM24-C165 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008386	Metagenome	334	Y
F013576	Metagenome	270	Y
F020447	Metagenome	224	Y
F053565	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_100392664	F020447	GGGGG	MIKQIMIVLILTAIILFLGYLGIEYLIAELISDVFAQWS*
Ga0075441_100392665	F013576	GGAG	MFDDIKKEIDDTLNHLNPFENICSDGYKGNNILPDHVKKFIADKKATQKEQEMIDNWEDEIKLNKGEK*
Ga0075441_100392667	F008386	AGGA	MSSEKQLILIILTAVVVFGYQYYKDEKKKHDEKLQKHLSKYFDSKW*
Ga0075441_100392668	F053565	N/A	MMKNYKNICQNTLTANGNKNLRELARLTLLNILSVQGVIYTHYKNKQLNKKQRVIK*