Scaffold Ga0075441_10035322

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10035322
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2022
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM24-C165 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008387	Metagenome	334	Y
F008722	Metagenome	329	Y
F052889	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_100353222	F008722	N/A	MKTKNMTIKEAIERILIAVEYYDMVHDTGKEKETDKNINYVWKGYDRLIEIEKNVA*
Ga0075441_100353224	F008387	AGGA	MLIVIKWVLLLLCSMIGMIIILTDPTMQSLGFTLFFGCFLLFAIDVARNFIN*
Ga0075441_100353225	F052889	GAGG	MKTKTDYIYSTALAYACYKSDPKRVDDNLLRNMFKDLCLLSDEYAFDYKQELKNILTESEE*