Scaffold Ga0075441_10024055

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10024055
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2504
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030251	Metagenome	186	N
F046022	Metagenome	152	N
F077805	Metagenome	117	N
F092744	Metagenome	107	N
F105929	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_100240552	F077805	AGGAG	MFKVSYSIRVRQNIVPCEVTFATRKMAETFSGITYGSKIERVYTNDEMISLWSQGADIGAW*
Ga0075441_100240553	F030251	AGG	MFSTDSFPPVKMVTFPALQREISLVKRTPFIGTPIWLVFERNGQAEPQQVAWFENFNFACACFDDRTKAAENEN*
Ga0075441_100240554	F046022	AGG	MKINQQIITARALHTLQSQPVPQRAVDPIDKTAKNLIWKQIFDAQLKGESDE*
Ga0075441_100240555	F092744	AGGA	MSTFTTIETFTAKSHPTISVELSRLTNRKGENLYIVSFLDAMNSQEVTLGRYHSLTKASEGFDLHKKAAQWGELYA*
Ga0075441_100240556	F105929	AGGA	MTTFTGYIARETEKAYGILVNLTDEKLAWIPKKKIESETRAELAAVIVMAGETIQRKVWLTDLEIDTDWFNKVLA*