Scaffold Ga0075441_10016469

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10016469
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3088
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004439	Metagenome	438	Y
F012921	Metagenome / Metatranscriptome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_100164692	F004439	N/A	MFKRIWPDTLRATVFHTTDGDGVRNISKMEGQKKQISAFFSMQSRYMDIGVATQGGVHSVLEMDADVLLSASGDVMSHLDQAGRRYTSISDLKETSRSINFSAVEKDLQKMFDPLVKKYLKRGEFQENATVWELWRMAERKVDKKTMSLIIKDYMDGMEKVIKKNIDTFSSAMLSYAKKRSTDLSWDEQIVNNFKVKAAHFFKLKLKIAQTEKEASLYPEYQELMKFAKSKGWKVKVWDSATELEIYTREVAKKELGK*
Ga0075441_100164696	F012921	AGG	MADDFDFGFSAVSTDEFKKTQPTEVKVQKPAVSSNEFKELKSKIDSLASVIQTLGDNDDTSLFDETGEKISRLEGKIDKILALESSQVASAL