Scaffold Ga0075441_10014437

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10014437
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3319
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013138	Metagenome / Metatranscriptome	274	N
F015799	Metagenome / Metatranscriptome	252	Y
F087777	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_100144373	F013138	GGAGG	MSNPFTRQAISNHNTKNYSVEDVKKSNARFYEKFPAAIEPAAMIKKAMQNPEDEVVLQQTRRENEMENIIGKLNITGSIY*
Ga0075441_100144374	F015799	GGAG	MTKTQTVTRTPVQYNSSGAAAGFGPQAHPPHQDPSAAKTIQDKTKGNSNYHADNTAFISKLKRS*
Ga0075441_100144377	F087777	N/A	MSKNRKDNDDNDFVATKAEQTFDDDGNTKVAEIPSTKKTNLNVIRQIGQKAKDKFSVNKLLDSKQKPAKVIQLKPKD*