Scaffold Ga0075441_10004824

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10004824
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6031
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009243	Metagenome / Metatranscriptome	321	Y
F019396	Metagenome	230	Y
F070579	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_100048243	F009243	AGG	LNTNFEYYYNTVPEKGLCRNNLIYTSLISNDKKTFCQWYHNDEGYHGGHNQVVDPSLMQQKFDREVEYLLLMQHAYPQHIPEILDIDLENKKIYLKIDGPDMWELAGCVGNNYSNVIPDWDTQMLEIIQAHKNLGLYKYSMHPSSYFIVDDKLKSINYFFTYDRTDSRISVKEVLSHISLDRQADLMPKLKQAGIDINTPASFKDLQCLAFDSFKTNFTTEVMEKAKEIYV*
Ga0075441_100048246	F070579	N/A	MKFYITGSTRGLGKYLADHFKCTCIDRPIDLNTDIDKVLDLFEEGDCIILNAHASQLKYVKRLKDKCKLVVMGSIASVHPDPNMPEYSKEKLALENYVNSISTYCPVLYLRLTSSSYKSYRLIARSIQFWIDNPDTTFIGYNIND*
Ga0075441_100048249	F019396	GGA	MNLSNWNPYLKLDDYGSTCMAQQTYEPLVSPDEKIFCKNYSFPNNYQYMDTSDRPLYTEDVVDWFFNNEVEYLNKFSGKSYAPEVIDIDFKNRKIYLKWYGNSCNQIINSGQEWPQEQWHQQIKDIILDQYNEGVYKLTMYPHCHYIDNDNNMRSIDWYGCVQVNNPYVEEKYMQGIIHETAQFRLEETGKSIDGVLNIETMFKRSLGEHVLWGDQNMSYIYKEIFNE*