Scaffold Ga0075441_10003331

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10003331
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7377
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001048	Metagenome / Metatranscriptome	793	Y
F005400	Metagenome / Metatranscriptome	402	Y
F008155	Metagenome / Metatranscriptome	338	Y
F014792	Metagenome	260	Y
F038427	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_1000333110	F014792	N/A	MFNHEIENYSWGVVQDMIEREISSAFKLREPPQMPTKKEIKKLIKETVKGR*
Ga0075441_1000333119	F038427	N/A	MTHEQIMNTIKEGLHYLTTIDLVSLHAEISKVQIEHSHKKEFDGDK*
Ga0075441_100033314	F005400	GGA	MKCTDAHPNSPPLGKNYKGIKDLTHTNMCYRCDYCDQGYNQIYWLQQIAMQYYICDRCQSYYRLTHKDLIELKYVETREEWQAADCYPNRGFFPYPIGFDN*
Ga0075441_100033315	F008155	GGA	MNKQQQQNCENSDNSQLAMVVYIHSLRKQIEKEVESRYSKRIEYLVNANNELMNELEQCESEIVTVEKECYGRGV*
Ga0075441_100033317	F001048	N/A	MKIKSTKQFWWRFNHLKRNGGEITITDRTPEMDVKEFNRIELLVNKRVRWEIGSEGMAIWNACGVKDIPTLAKAYGIK*