Scaffold Ga0075441_10001364

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10001364
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11780
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028007	Metagenome / Metatranscriptome	193	N
F041447	Metagenome / Metatranscriptome	160	Y
F045382	Metagenome / Metatranscriptome	153	N
F049239	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_1000136410	F049239	N/A	MKIDQIINWLMGLDIIILSAIGFFLVIGFLFLVTAVYSLMYDKAFRKKYLLKLSTIFFIFISGVLGVLYLFVKHGALVL*
Ga0075441_1000136420	F045382	GGA	MKKLLVMLVLAVLATGCVFVAKEADKECDKAGEKCESVSESDVNSSS*
Ga0075441_100013645	F028007	AGGTGG	MAAYDQKELEQWKNGLLGKSGGGSKKILLVAVIAIVVVVAYLYLPK*
Ga0075441_100013647	F041447	GGA	MTSKDEKEECPAHKCKPFMLMSYVAAIFLVLGICAFAKYLFF*