Scaffold Ga0075441_10000628

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10000628
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17739
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (74.19%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004261	Metagenome / Metatranscriptome	446	Y
F016063	Metagenome / Metatranscriptome	250	Y
F016598	Metagenome	246	Y
F018272	Metagenome / Metatranscriptome	236	Y
F030569	Metagenome	185	Y
F046652	Metagenome / Metatranscriptome	151	Y
F083280	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_1000062810	F046652	N/A	MKTKKQSDIIDKAIVSAMMVESIIIAFSIKDDMYLTVALGALMIIGLKATKKVLDG*
Ga0075441_1000062815	F083280	AGGA	MKYLSLLFLMSCAPNAMHSHILDNKEVTHIYLSDDIHSGSNYWCVRHGMMEKIEIKKPNVLSSGKN*
Ga0075441_1000062819	F004261	AGG	MRMALSLALGSIVTQVARLARDMWNSVNLNDIWENEQRNWDDII*
Ga0075441_1000062826	F030569	N/A	VRKFKCQHCNKPNPENWFICRDCGERASPPKFTTNSFIISEVGKRTDVEFNTISYDESISKMNKADKRWKGF*
Ga0075441_1000062828	F016063	AGGAGG	MYTDSLNKNSSAHQTGEKAFQKLDNTVAVARTLKATESGTLFAVDMSTVDNNVVLTLPTASDEVAGVNYDFCFTVNCDDDADFIVTTGLDATDIYGYIVAGAANSTVDDVDGLSKLTIDGSVSQAIEGMRITLICDGVNWHLSGYVPVAIGTVVVVEAASA*
Ga0075441_100006283	F016598	N/A	MAIDREKRFLYNSKGVDTKLQVGYPSKTSGNNGEERVVKTPDGKLRLYRKELGAWYYLEFTRS*
Ga0075441_100006286	F018272	N/A	MLKMLIKKVVKKIGMVQLLMMVGDTAVKSTKSKKDDKVWAEVKVLLETFA*