Scaffold Ga0075441_10000180

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10000180
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31683
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (62.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002915	Metagenome / Metatranscriptome	521	Y
F004166	Metagenome / Metatranscriptome	450	N
F006870	Metagenome / Metatranscriptome	363	Y
F007087	Metagenome / Metatranscriptome	358	N
F076523	Metagenome	118	N
F086197	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_1000018011	F006870	N/A	MKKMSQILLLALSLVLMNKASSVETKLSPQGSDKYNVYIKGDAQSNEKKLRDIFQSKVNEICGTRFEIISIKMDQINKVGSKKNVLNGIFKCFVNSQM*
Ga0075441_1000018012	F007087	AGG	MKKLLLIALTIPNFVLAEDFKLVCEGEESTFRNDVLENTSKATKSLQVKDDSIVIDSMTYKSKKFDYGAIKGSSKYVKDDAQIIIETTQVSNECDTALLSVKLNRSSGMIESTSKRIGACDGSSFTTSSKFIGNCK*
Ga0075441_1000018014	F002915	AGG	MKKLLLLLLTIPILGQSKEIFMNDQGLEIQYDKPSISCFYDKEAYEGYLNTCLMLPNYETCAQTKYENYICGDKSMVEKLEKKSKGS*
Ga0075441_1000018015	F004166	AGTAGG	MKKLFLLILLVPLISCSDHQTNNSWGSYATNKETQKQEFWFTSYKTRGECEADMYWQLEGEEDDSKKRISNWHKKPYGCHFMSNNKWLSMYYYLIYKDENLGCLWESSNPNVQIKYSVTLKSFKNVLEQGRCILGD*
Ga0075441_1000018036	F086197	N/A	MKTKYNHSESGMVLVITLILILTLTILASSVFMSVNRYTETIDNISYRPQAMEAANSCIDQALDWLATSDGTNWRDGDTPIDLAAESNALNKKTVLEDTTMEGITRDDMFSVMLEKSSCTRVLITKVSSEASRGEGGGGEIGSETSYGSSVLKYVFKIEARGVFNVPLNSSGTAIKFDNWNTTSNVVDLEVHVGFSPT*
Ga0075441_1000018040	F076523	N/A	TNLSLIMINLKITIFVLCIISALNIKAENKFETLCWDAMADMTIYMTSYGSTEEINDAEVYRWVDDNYVYQPLKTFLKRKWLPTLKTNEDFTLNNVYVMKDKYLSSCVAAIS*