Scaffold Ga0070715_10070014

Overview

Basic Information

• Taxon OID: 3300006163
• Scaffold ID: Ga0070715_10070014
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1564
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009784	Metagenome / Metatranscriptome	313	Y
F018637	Metagenome / Metatranscriptome	234	Y
F065182	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070715_100700141	F065182	AGGAG	MSSHNDSFVASGSSATEVDSPIPPDFLVENHFSIFLIRPISPAAFTWVEQHLPSDRLTFGNAVVIEPRYVWAILVGVQDDGLVVRRD*
Ga0070715_100700142	F018637	GGTGG	VIKKLAAEKIRARLEKRLWSFIGCEPHEVPRMKLGTLVHTAFLLWGDGEELGGFHTSMDGVLQLVGREIVWEIEPKTEEAETPKVVIN*
Ga0070715_100700143	F009784	GAG	MFKGEVAEPGFGHFRKYRPKFYQTVLALSGVALYPGTINVRIDGEMPHFPLPNTQRIPGQDQIDLDHNQDILITPCVMEGRPGFWILPVFKGTWNPNPAGHFPNQIIEISLVEEFPNIAPGLTVSLEIPATPLP*