Scaffold Ga0075030_100282859

Overview

Basic Information

• Taxon OID: 3300006162
• Scaffold ID: Ga0075030_100282859
• Source Dataset Name: Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1327
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Clearfield County
• Coordinates
  • Lat. (^o): 41.170727
  • Long. (^o): -78.4726

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002396	Metagenome / Metatranscriptome	564	Y
F003157	Metagenome / Metatranscriptome	504	Y
F004392	Metagenome / Metatranscriptome	440	N
F099394	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075030_1002828591	F099394	N/A	SDIGFSFLTASEVVLPLREQQNPRKSGCFQETEVSSI*
Ga0075030_1002828592	F004392	AGGA	MPVNGPETIADSKTSQPVASEGRSVRATRDAKPAVGRGAATRRRRDRQEISQTNGEERFFLASANRNGDVPTLGRECATEAEAIIEAFREKVNLYRVTEFQTRADIGRSGEPILRKETLKKNNPAS*
Ga0075030_1002828593	F002396	GAGG	MRSLFPSTYDRADVLMSAGCSTFVSAALILVIPRVGIVLLEILLGLFFIGCALAARARLRIQARSQVKEGPEGSTNAKAKWFDRYDVLMILTVIAIYSSMSGLLRHAGLSEGTVGILPLILFAAGILLKPRAVQFIERRRKDRKAETHDGRSRLDAGEKQEIARKETVERCQ*
Ga0075030_1002828594	F003157	GGAGG	MRDPAANPKRENAVLSGFARFGGLDQLDWLMILVSVLLGTIAKQHHFLDLPDWFLEWVSPFLLMAFGYKARRKITEVVESHRDRGKDTHEG*