Scaffold Ga0075030

Basic Information
Taxon OID	3300006162 Open in IMG/M
Scaffold ID	Ga0075030_100029475 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006162 Open in IMG/M

Scaffold ID

Ga0075030_100029475 Open in IMG/M

Source Dataset Name

Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4690
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

4690

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Clearfield County
Coordinates	Lat. (^o)	41.170727	Long. (^o)	-78.4726	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Clearfield County

Coordinates

Lat. (^o)

41.170727

Long. (^o)

-78.4726

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F012141	Metagenome / Metatranscriptome	283	Y
F047844	Metagenome / Metatranscriptome	149	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0075030_1000294752	F047844	GGA	MSHGLSVRLAVTAALWGGVVSVAWAQDSGPQNLPLGDVARQTRSQQADTKGQPSKAQQLVDEMQRAQEEAANAPTGFKSYDAGDYRLFVPFPYSLEGRENGGAVLLGSRLGVTNTEVMAGEPISLPAGITPEVLSDAVLLNLVRQLAALHGQSPYCTAIKFGERKAFRCSWSTSPRLLGHQVWGSMQFVVASNSIIPVMCVSPDDNLHRQCVIYDNWGHNSCSDEDRSLPESQKTQAAVDRRVREEMTAVQMCEQIIYPSIQLKEDIVVHPVTIAEGKASKAAAGTVPQDTSVASGEQSESLAELARQKRQAPRRQAQAKLDNADGGSVAPVGFQSVAIQYCLNPQQCSEATVVVPEKAEVLSRVNGQHIFKVMLNGGVVMLYAGPADVNSPYRSMTDPDYLRMRDLANSNGWSREKADGVSTQELTIDGRPALMTRFRYLRDQKTWWIGERALIEVPGAQFLVGCTAVEEHFADAEALCTTLVNSLRLP*
Ga0075030_1000294754	F012141	GGAGG	MGDRYWLWVGARLLVGFGIVAWAASYLGTGSGEKEFQKTLDAMKQVHSFRVASTTNQVGVQQNDMLWEVDCNRDLLHHQTHMVMTGSNSGEFNSDELYVKGREYDRQGDGSWGGSHYGGTSYSAGWYCRNLAQGTDSNLLPEIATMIKRGIIQKGDKKTVNGVRCREWLVTLKGGTSGLEHDTVCLGLEDRLPYEMTVDWAHSRSVFSDYNAPIQLDVPEAAVQPASSNSGSN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075030_100029475

Overview

Ecosystem & Geography

Associated Families

Sequences