Scaffold Ga0075030_100003610

Overview

Basic Information

• Taxon OID: 3300006162
• Scaffold ID: Ga0075030_100003610
• Source Dataset Name: Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14020
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Clearfield County
• Coordinates
  • Lat. (^o): 41.170727
  • Long. (^o): -78.4726

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001032	Metagenome / Metatranscriptome	800	Y
F001686	Metagenome / Metatranscriptome	652	Y
F001745	Metagenome / Metatranscriptome	643	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075030_10000361010	F001032	GGA	MGLGGMDTLHGKRNCKVGSCGSAAITTLDRQALCLNHFLLRCYERLEGLDPRGRKFTAEPVDLASMRAFIEECSRKALDVSLQSQNLSNLQRGRLLDILLWAGELFLLLRIPRLTLAQSMASSEDRRATHAASANF*
Ga0075030_10000361013	F001686	AGG	MNDFTAWMQSNWYALGNLLSQFAFLAAGVWFARQILKTMRASQEQVGALLKLSVTGAITDRHSSSAAAGHPFASASPYWLTPTELPPVAPLELPESGPSRWAAARHSVAAARHSLMVWLQTPMSSGDAAPWRKALRWLQSPAGSHRSAA*
Ga0075030_1000036109	F001745	GGAGG	LASPVRYSSMTNSVTYPFLQNDTLKSAAISPGTAGLPPVTALSVEFVAKPQEAHRVQSAIPAALAGALKDVNGFAGCLVMISDQEARLVTVVTLWAGNDRAKCCSQNTRWVHALLKPYLDRCLRVQTMVAHLPVLPMQHFMPAIHPETNAAEECSMMQDRISEDETVCVA*