Scaffold Ga0075030_100000197

Overview

Basic Information

• Taxon OID: 3300006162
• Scaffold ID: Ga0075030_100000197
• Source Dataset Name: Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48932
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (72.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Clearfield County
• Coordinates
  • Lat. (^o): 41.170727
  • Long. (^o): -78.4726

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000969	Metagenome / Metatranscriptome	818	Y
F002981	Metagenome / Metatranscriptome	516	Y
F012141	Metagenome / Metatranscriptome	283	Y
F047844	Metagenome / Metatranscriptome	149	Y
F087522	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075030_1000001971	F002981	N/A	NLPPAKIVLVTIGIVAVIVVFASFLKRAKPQASGTIVNVAAVDIPGQDSTMVALTFELHNTSDKILYVHSLQSSVKAPSGDATADAVSAIDFSRYFQAFPSLKNGAQPALTPETKIQPGESVTRTIIVAFPKTLEAFNQRQSVSVVVWPYDQDLPVVMTR*
Ga0075030_10000019726	F000969	GAGG	MVNDDVVKCPLCGGFTHIEKPDLLQALKNPRLREQVELYITELLKSPVEDLSAVGAAQAGRDFQKDVHSWNPCVPMWRRSPKE*
Ga0075030_10000019741	F012141	GGAGG	MRDRYWLWVGARLLAGVAIVAWAASYLGSGSGEKEFQKTLEAMKQVHSFRVAFTANQIGVQQNEMLWEVDCNRDVLHHQWHMVVTSSNPPSELNQDDLVVAGQEYARQQDGSWSPARSSGFGSAKIYCRHLGQGTDSRLMPQIATMIKRGIIQKGDKKTVNGVRCREWLVTLKGGTSGLEHDTVCLGLEDHLPYEMTVDWEHSRSIFSDYNAPIQLDVPEAAVQSASSNSGSN*
Ga0075030_10000019743	F047844	GGA	MSRRLSVRGVLIAALWIGALSVFAWAQESGSQNPPLGDVARQTRAQQADTKGQLNKAQQLVDEMQRAQEAAENAPTGFKSYDAGDYRVFVPFPYSLEGRENGGAVLLGSRLGVTNTEVMAGEPIALPTGVTAGMLSDPVLLDLVCQLAALHGESPHCSAIKFGEHKAFRCSWSTSPRLLGRQVWGTMEFILTSNSLIPVMCVSPDNDLHQQCVVYDTWGHNTCSDRYARRTPADIETSYREETTTAQMCDQVIYPSIQLKEDIVVHPVTIAEGKPSKTVPGAVPQDTSVATGAQSESLADLARKTRQAQHGQAQAKLDNAEGGSTAPLGFQSFAIQYCLNPQQCSEATVVIPEKAEVVSRINGQHIFKSMLEGGGVMLYAGPADVNSPYRSMTDPDYIRMRDMANSNGWSREKADGVSTQELTIDGRRALMTRFRYQRDQKTWWIGERALIEMEGMQFLVGCTAAEQHFADAEALCTTLVNSLRLP*
Ga0075030_10000019745	F087522	GGAGG	LLCLGGVHLEAQTRAVQAPHKILLQAEVKPGEVLRYELEAGASFLPIADASGAILTPARGPCDYSMSAIVTLRPQAPDKNGNTPVEARYSETRVTSVRCALFSAADFQKRLAALQASLVMFRVGPHGETGLSHSQDGYFRYWDGGDLLRKVTQDLLQTEFSPQPVAAGATWKPRGQFAYSHDRALKDLELSGADLRFRNLVPVDGKTCAWVTSQYVFSPVDLPAAGTASGGRVVPAAGNNAVAAVLHISLLLDPESHRVAWLHRSQTIDNKLTMASPFDDNDPADGPAEPEELDWENPMPYLSSMRSDNPGRYPFMTFHFQEEARARLLPDERSAEWLAALKRFEANPEPESGTTPVPQAKTILPNPIIQAAKPAVVKRTTRVVVDSDSLVPTPAGFTRFEKALCRDSWFCATASVALPGDVQISEDTPLHTVYLAQKDNLLVSVLVGPALDRRHPGLTEEEELRKQAEYYLASYVWMAEKPGIGSSFTGATLDGYPGLITDFSATQRDLANIHGVLGLLLTPWGKTVPVSCSSDHAWSTELQAMCEKVVTSVSLRR*