NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0082047_11642

Scaffold Ga0082047_11642


Overview

Basic Information
Taxon OID3300006159 Open in IMG/M
Scaffold IDGa0082047_11642 Open in IMG/M
Source Dataset NameMarine microbial communities from the Red Sea brine-pool interfase layer Discovery Deep
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterKing Abdullah University of Science and Technology
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)501
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Red Sea Brine-Pools

Source Dataset Sampling Location
Location NameRed Sea
CoordinatesLat. (o)21.28639Long. (o)38.28722Alt. (m)Depth (m)2038
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F106033Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0082047_116421F106033N/ASKYALLECNMDPDHDDVEISDHPDFVHHDSGAQFSWDGWTSVVFISDLRHDGDFGLKLKSTDNDIIPFRARGDTAERILSEVTAIYFNNTGTAGTNYLLLEGY*

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