NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0082047_11043

Scaffold Ga0082047_11043


Overview

Basic Information
Taxon OID3300006159 Open in IMG/M
Scaffold IDGa0082047_11043 Open in IMG/M
Source Dataset NameMarine microbial communities from the Red Sea brine-pool interfase layer Discovery Deep
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterKing Abdullah University of Science and Technology
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)694
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Red Sea Brine-Pools

Source Dataset Sampling Location
Location NameRed Sea
CoordinatesLat. (o)21.28639Long. (o)38.28722Alt. (m)Depth (m)2038
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052244Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0082047_110432F052244AGGAGGMSDKLRTEIYLLLLTLALSLVVAIITFYIVAGTWARIDRGLDQIDNMIAC

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.