Scaffold Ga0007834_1034649

Overview

Basic Information

• Taxon OID: 3300006129
• Scaffold ID: Ga0007834_1034649
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE06Nov07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1268
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000924	Metagenome	832	Y
F074311	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007834_10346492	F000924	GGAG	VRPLDAMFGSADGPYFRLPDSVDPSSITSAWVRGLDEDLRHIRAKSSAFQKKLVKERTLDTPEETQNCYQPGDFVLFQRDPMVPRPTKLASPYTGPFEVIQQRKKDVECRHLVMGNIRVLHVTRLKLFVGTREEAHKAALLDADQFVISRIQYWRGNPEKRSETFFYVEFDDGDKVLLPYSKDLSAAAQFEDFVYSEPQLFPLRFNAADAPKRVAAMRKEPIRNVEIHDVFYLD*
Ga0007834_10346493	F074311	GAG	VTRRRYRFIQVRCPLFDDALFTLWDHYYVFAFGSIHELTTSHTLVTEEFCLLYPAVLPERNRDR