Scaffold Ga0007828_1012419

Overview

Basic Information

• Taxon OID: 3300006128
• Scaffold ID: Ga0007828_1012419
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Oct07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1809
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023521	Metagenome / Metatranscriptome	209	Y
F064346	Metagenome	128	Y
F094831	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007828_10124191	F023521	N/A	NEARVNQLVSFGEEVHMILINPVYSKSAAAKELLRLDHANGAKQLEQFYTKFVRDENPFRVVKLKVPSVAMQQLVGAKIEEEPMTRKEAARLRAEWNRKHAHLSYDGE*
Ga0007828_10124192	F094831	GGAG	MPYVPRELRTESFIAGFSNIYTMLEDNPEMRMIPIDQLEEIRPKLKQLGYRFRVVFRGPHRRNRGTLKRNAQAFNVYFKGR*
Ga0007828_10124193	F064346	AGGA	MSKYRTSAEYQAIVREMPIQEIDGLFETFQNCATRTAEETRIMDILEAEIERRIANWEVCVV*