NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007828_1001199

Scaffold Ga0007828_1001199


Overview

Basic Information
Taxon OID3300006128 Open in IMG/M
Scaffold IDGa0007828_1001199 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Oct07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6146
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048735Metagenome147N
F052343Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0007828_100119910F052343AGGMAKTKKIVNREGVSSWGFNTINSNGVAPTSRVQTANDAFTICWNLRLDNAGRERKWGRIYKCFKGFPPTDYSQVAARQLSGMSNVPFRQMKFIVDNQKSSFVDMVMERNTAANITTKIGNPTEKEIYSNLISIGFDRMLRSWTSYNYNVELDVEEMTLYGKGFEIAEDRDGWPTKSF
Ga0007828_10011998F048735AGGMEYNGLNLEPPKDTTYGLSFLETVPQFIRELTAYRLTRGEFGRRERYKRGIKLEHTDLKNPAQHMVNCFQLIYGNDVLLHSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIIIDWLCAPDCTSTYVASTSLDASEDRLWGKVCTLYRIAMRNLQTQFGKDTSIGNLVEYRRMIVFESIDTRDTERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPDDPMEWESVNRYTHKWKTRTGVALHLSGEDSPNFKAPDAEIPPFDRFLTIQGEAATLKRCYGNKNALEYWRNVYGWWPDSSVELTVFSKQFIQGCDISWEPVWSDRTKVVCGFDPAFTAGGDRCAATFCRYGPNDTGRRVGFYLGTREYNSSVGEVFEESIAMQVVKDCLEYGVHPRDFGLDISGDGGKMLRAIIIEWGRYHPEAMFITPISSMGMPTDRKISNLDKRTAKEAYDRRVTESWFQVHTAMSTQSLVGIDVERHTALVSELCSRLYFHKGRKVAVEKKLDMKQRIKKSPDLADSLTYAVEMLRRAGLEFTFEDQSAESLDIIEIRDWEDRLIHSKNNAQEEIENDEWGYAGKSCDEDGF*
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