Scaffold Ga0007828_1000760

Overview

Basic Information

• Taxon OID: 3300006128
• Scaffold ID: Ga0007828_1000760
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Oct07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7894
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030333	Metagenome	185	Y
F040990	Metagenome	160	Y
F089853	Metagenome	108	Y
F100256	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007828_100076012	F030333	N/A	MAIDRNPHLTIPVKTYTHYTECEPWCLANIGEWNIAWWRDFPDIAMSVVVEGPHEDCYWFATERDALMFRLRFR*
Ga0007828_100076014	F040990	GAGG	MNYYYEISDKYDGTVFGDKWRYWCMHNCSPADMGKMCFKTHDEFMARSSRVWLENANGVYQVHPKWHGFRGHVDPHEFTLVKLRAKTIKWWQGE*
Ga0007828_100076017	F100256	GAGG	MIRVSTKDQAFNQAWCNASRALPVRELELPRQYGQRWREAYRCKVDGGDEFPHTYYVFDRDEDYTWFMLRWG*
Ga0007828_100076018	F089853	GGA	LKIASIMPPDRNPYQGWQPCIDWCSANCEGPWLFITEGVFEFELDSDYVMFMLRWS*