Scaffold Ga0007828_1000003

Overview

Basic Information

• Taxon OID: 3300006128
• Scaffold ID: Ga0007828_1000003
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Oct07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 133345
• Total Scaffold Genes: 233
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (25.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051137	Metagenome	144	Y
F087204	Metagenome	110	Y
F103266	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007828_100000353	F087204	N/A	MIITSSQQFENLCNPADALNIEEFEEITLKFGSFVCIAKNKKMNYLNFLKFLVDDKKTQKIYFALLGEYSLQNIIRAYLGSTPNVYKKIFRSKLNQKKNA*
Ga0007828_100000358	F051137	N/A	MSKNKITTCSYFIKRLRDSGYVTDKVYSDYSNSDPRSWTVVVDPRVSSVMITCFNNHNFFGEEYFEMHDGGQFIPEHFKLKTSSIETLIEYLVKFGINNKSDKY*
Ga0007828_10000039	F103266	N/A	MIKRPKQEDLIAGKVQLDQYVGNEFNLEGWQLTKVLDDILMCQYVDVNDDGTEIKRGSIWVPINTVNFTWRLAKVILAGPDCKTVKEGDIIVHPSDKGITVQNFNGLKHIVFLNESRIFGVCESIEETNNKKKK*