Basic Information | |
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Taxon OID | 3300006128 Open in IMG/M |
Scaffold ID | Ga0007828_1000003 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Oct07 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 133345 |
Total Scaffold Genes | 233 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 60 (25.75%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F051137 | Metagenome | 144 | Y |
F087204 | Metagenome | 110 | Y |
F103266 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0007828_100000353 | F087204 | N/A | MIITSSQQFENLCNPADALNIEEFEEITLKFGSFVCIAKNKKMNYLNFLKFLVDDKKTQKIYFALLGEYSLQNIIRAYLGSTPNVYKKIFRSKLNQKKNA* |
Ga0007828_100000358 | F051137 | N/A | MSKNKITTCSYFIKRLRDSGYVTDKVYSDYSNSDPRSWTVVVDPRVSSVMITCFNNHNFFGEEYFEMHDGGQFIPEHFKLKTSSIETLIEYLVKFGINNKSDKY* |
Ga0007828_10000039 | F103266 | N/A | MIKRPKQEDLIAGKVQLDQYVGNEFNLEGWQLTKVLDDILMCQYVDVNDDGTEIKRGSIWVPINTVNFTWRLAKVILAGPDCKTVKEGDIIVHPSDKGITVQNFNGLKHIVFLNESRIFGVCESIEETNNKKKK* |
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