Scaffold Ga0007805_1028718

Overview

Basic Information

• Taxon OID: 3300006127
• Scaffold ID: Ga0007805_1028718
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE24Aug09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1270
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026798	Metagenome / Metatranscriptome	196	N
F038078	Metagenome / Metatranscriptome	166	N
F043767	Metagenome / Metatranscriptome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007805_10287181	F038078	N/A	MAEKYEKCTVEMKKSKRESIERFFSLINFIFFMSEEEDITLLRYLHEAKAKVLANSEYWSLVDYIGMTIGRIFRCIDTINVEEEWDSKSNKEWFHEMIKSMNTLKDLHPQWHLTKQDVDRYNTTCPCSQCSTEEGREDTISSSISKLNI*
Ga0007805_10287182	F043767	N/A	MENQEQGQSNGHSLLFSRHPSEANAYRRKRLWREKALEALDLLNHIKLEEIATSEHNIQVYEAIRERLKMLKMIDPERKIHQDTLVETTVIKYDCPMCLPTDDSDYELEPNS*
Ga0007805_10287183	F026798	N/A	MNKSKEKPISHNCAEISSKSKKGNNVNIDKVIDENNQLTAIEKLALRRGIERVNRRRDSQQAKIIRLVNSLDVKQNFQDMNNQLKLQILFNTVLKLKRVYPSKSAMWKAPNNNTLPPYKSVRLENKLLKRGLRKKCSSYPNKEKI