NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007855_1061968

Scaffold Ga0007855_1061968


Overview

Basic Information
Taxon OID3300006126 Open in IMG/M
Scaffold IDGa0007855_1061968 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH01Aug08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)789
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009206Metagenome / Metatranscriptome321N

Sequences

Protein IDFamilyRBSSequence
Ga0007855_10619681F009206N/AQPGGSGTGRTVANTQQNVVIDANAQAAAAQMAQQILANTNVTLKQELVKIPDFWGEKGKDTVTATQFMARIDECSVANDWNDTTTYANFSLCLKGEADEWLASKVRLLELTAAQQTWTRIRPLFKKEFAACSDDKLIIDGLANLAHRPGENPRKFMSRLEKLFNTLHENYASYRIKPERPAPIQPQGTYTQDMLTSFANDSVKAYNKFLLAQVFRAAAPENVRKLLSHKDQTRMTVDDAYDTFFTDHRVESDKRERTMVNVIN

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