NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007852_1058635

Scaffold Ga0007852_1058635


Overview

Basic Information
Taxon OID3300006123 Open in IMG/M
Scaffold IDGa0007852_1058635 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH28Sep08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)898
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003209Metagenome500N

Sequences

Protein IDFamilyRBSSequence
Ga0007852_10586351F003209AGAAGGMDGYVEPVYRHLKKAHSRGAVGVDLLTVTPVDEAGNTCLIVIVVFYTKYVWATPAKEYTAHTVASALFTFFCTFGMYDELWSDPGSDLMAEVVQKLSEWMGIRRVISLVDRHESNGVEGTNKQILRHLRTLVHDLRVPKKWSDPTILSLVLFAVNDGVNSETGVRPLDAMFGSDDSPYLRLPDSVDPSSITSAWVRGLDEDLRHIRAKSSAFQDELIKARTQDTPDETQNRYQPGDFVLFQRDPSVPRPTKLASPYTGPFEVIQQTKNDVECRHLVMGNIRVLH

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