Scaffold Ga0007867_1025592

Overview

Basic Information

• Taxon OID: 3300006120
• Scaffold ID: Ga0007867_1025592
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH25Aug08
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1332
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016243	Metagenome / Metatranscriptome	248	N
F022147	Metagenome / Metatranscriptome	215	N
F037570	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007867_10255921	F037570	AGTAGG	MNIKRLDLLKIRNLKFRASQRQSVIDRLLRKKDLEKDLWKVSIKTLIILAKIKFRCEELERISENLE
Ga0007867_10255922	F022147	GAG	MQHEKDEYIFQLVTRAVKEIDSSEICRKREIFKILAKSEVSLEMKQILAKSARVISELQHYTEEAYNVSQYILVHYFKIDDLIKKESYPLQEVITFHNKKCKILKSKDIVTLEKVAIANKLLIKTLSEEIRNALKEQLALVSKVGSTFTNLSLMYTYIENKDLSLQSEAKSRQWSNEYQET*
Ga0007867_10255923	F016243	N/A	MNEAQITKIVMRLATRSKWSIEVRRDKVSQMIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKHYLKSEYIQMHRPSFLNTNTIEDSKAGFIKRLLEVSDSRKSLKLQDSEITTHSIYHKIDPGLRIALNNNIVTLLTIDNELIDLKVIYEFLIENCESE*