Scaffold Ga0007867_1000175

Overview

Basic Information

• Taxon OID: 3300006120
• Scaffold ID: Ga0007867_1000175
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH25Aug08
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26201
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (53.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F026565	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007867_100017515	F000934	N/A	MSEQVNIMDQRLVGQAISRNQRISTSEIVTVIPFQFTFKPNSYQLYSQNRNLLANLRYYDKSLEQYLNFGSTGWVNYIAYQGNMTPTQISACQWETASAGKNLVLGNLPSISSTSYIVKAGDFCQVDRYAYIATADVMRGSGTTVTIPVHRTLLTTLVSPENAVIGQYGTTVALGGNTYTGCTFPIILQQYPTYNLIPMTNDSFIQWSGPFKAFESVL*
Ga0007867_10001758	F026565	GGA	MFSQNTITQVSGFDNPCIAGELVWEQQTYWNLDIVGSDGVTPLDLTSATIDAQIIRRTVTNLQDSRYGLSFDIGDYSPTPTPISLTITNEVAAQGKFTLVINDSTWGLMADDPELDIGAQDCVAYSGRIKISFPASGSNPANDYIIFLLFLIRSDGIVVE*