Scaffold Ga0007867_1000065

Overview

Basic Information

• Taxon OID: 3300006120
• Scaffold ID: Ga0007867_1000065
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH25Aug08
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45157
• Total Scaffold Genes: 111
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 79 (71.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F053761	Metagenome / Metatranscriptome	140	Y
F095359	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007867_100006533	F095359	GGTGG	MTIKLGGLGQTISAYCPVCSEKMTHMCIATLGTGRTVRYAWECNACELSLKSDKDGYAHLLTELAYYA*
Ga0007867_100006538	F000684	AGGA	MTLQGYTYQIGDLFTTSKTGVTGRITKFSPVSNKVTRVQLQLANGQQRFAMVKTSK*
Ga0007867_100006550	F053761	AGGA	MGARTNYTIITTDNPAQNINVYAHWDGEESVANMQKAIRTAMPRINDLSYCTRILVDQLTKHGRDSETGYGLYVGQVDHEEEYDYKEINLVNKTITVGQMQFSIDQFVEVLA*