Scaffold Ga0007866_1010627

Overview

Basic Information

• Taxon OID: 3300006119
• Scaffold ID: Ga0007866_1010627
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Jul07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2035
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005630	Metagenome / Metatranscriptome	394	N
F011392	Metagenome / Metatranscriptome	291	Y
F029655	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007866_10106271	F029655	N/A	MNKLVFSVNEENCTNFLKKYPSIAYLMLTSKYKCKTMLSAYKNFLKVKDMNESKLGGNAETISSPTFGTKTFYKYDWCGCGGFAEVFQFVYNKNKNK*
Ga0007866_10106273	F011392	N/A	MNLSIKEINELIYSLGITASKGMMCDKELNVSLLDKLQCELNYRIGLEAIDEEIEVSSHYVSNEEADEDAMNYGIGVIKASEELKKFDDYCTLKQNETSVIDDYRIHLRKLKTPGYASQAILDFVDKKGAASYSEIQSYYRSITGSNSFSHILKNLRIPYKNRKTQRYLAKEGKDYSNAKYVIKVANPSNWVVKDSEAEEIEAKLRSEEARKKLWGDK*
Ga0007866_10106275	F005630	N/A	MNLYEVNGFYGTRNRGTILVYETRSGKRWYCVEGSCNINCTYDEINEGCNVETISDIDTMSSKD