Scaffold Ga0007816_1067117

Overview

Basic Information

• Taxon OID: 3300006115
• Scaffold ID: Ga0007816_1067117
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jul09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 798
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013757	Metagenome / Metatranscriptome	268	Y
F062427	Metagenome	130	Y
F071946	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007816_10671171	F013757	N/A	NTLAHAKLVYNKKVQAYKLVVAFNAHKQIKKIGNTEVVKYAFPTQAKCAYVSGDLLAENLQEELAKVLPHAVSTIRSNNIVFVD*
Ga0007816_10671172	F062427	AGGAG	MSKALVKRINKAFGKIYDMGDSGLDYLDGHSVLNANLMQHFYENTLDTLSKDMLETLAVQLETVVADAEFDLEA*
Ga0007816_10671173	F071946	AGGAG	MYNVVNNPIPKTGLFATPESLDQLMEYCQRFSGQERIIAITVATMALNLSHELVENNILN