NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007848_1069217

Scaffold Ga0007848_1069217


Overview

Basic Information
Taxon OID3300006111 Open in IMG/M
Scaffold IDGa0007848_1069217 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Jul08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)658
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016117Metagenome / Metatranscriptome249N
F024248Metagenome / Metatranscriptome206N

Sequences

Protein IDFamilyRBSSequence
Ga0007848_10692171F016117N/AMDSIHIELSPRLGLLIAAWRNFFTRLHNQSILTDNGFQYLLALLVDKLQEALDSEFYPLVLDWLKETLPKVMRCRGTVNLINQVPAHLWTPNHIFRHDYFVCLERRANRLS
Ga0007848_10692172F024248N/AAQVVPAPTSFPSSRPLQTVDPGLIARSFAVPLVQSAYGVPAVRPPMLRQDALRSLSPEVQVVPPGDSDYQADEAGRVVSPRPSTSTAANGSSSFW*
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