Scaffold Ga0007833_1007801

Overview

Basic Information

• Taxon OID: 3300006106
• Scaffold ID: Ga0007833_1007801
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2227
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016925	Metagenome / Metatranscriptome	243	N
F023279	Metagenome / Metatranscriptome	210	N
F035195	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007833_10078013	F023279	AGGA	LFRFHVLTNRKDLKEKVTTEKMADSSKENTEAIVDTIKSELAIGFKNCIDKIDTEKKVVDRYNWEIYVKMNKILHNSRRLDPQWAIEGDIGNSWSLRSILERDFKSKILNIDLSEIDSIDLEGYEELHQSLKDLRTSNPGWSTNKTRRSSPILLTPTQIGLQEENTS*
Ga0007833_10078014	F035195	N/A	MEDRTLKTEAEVIELVQNSLNNVETEKSFEDNYEVMLKLFCAIKRLKSIRPKGTFRAVGVSFKQVSTPQK*
Ga0007833_10078016	F016925	N/A	MKRGVGKAMPTQHIVATNGIIRPVGPTDLRDLIGIPRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLTIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF*